SubtiBank SubtiBank
ywnJ [2019-06-12 10:40:02]
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ywnJ [2019-06-12 10:40:02]

unknown
locus
BSU36540
pI
8.44
mw
15.93 kDa
protein length
140 aa Sequence Blast
gene length
423 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,759,169 → 3,759,591

    Expression and Regulation

    Operons

    genes
    [gene|E44811DF107D3761550E68F270E29B9E465D434D|ywnJ]
    description
    [Pubmed|12399481]

    sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|16497325], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|14762009], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]
  • [protein|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX]: sigma factor, [Pubmed|14762009], in [regulon|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX regulon]

    • regulation

  • expressed during sporulation in the forespore ([protein|search|SigF]) [Pubmed|16497325,15699190]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-A210 (ywnJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/210 NBRP B. subtilis, Japan]
  • BKE36540 (Δ[gene|E44811DF107D3761550E68F270E29B9E465D434D|ywnJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGACATAACCTCCTTTAT, downstream forward: _UP4_TAAAGCCGGCTGTCTTGATT
  • BKK36540 (Δ[gene|E44811DF107D3761550E68F270E29B9E465D434D|ywnJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGACATAACCTCCTTTAT, downstream forward: _UP4_TAAAGCCGGCTGTCTTGATT

    • References

  • 14762009,16497325,12399481,18179421